CDS

Accession Number TCMCG057C06229
gbkey CDS
Protein Id XP_018471324.1
Location complement(join(21984542..21984878,21984951..21985108,21985232..21985441,21985532..21985804,21985946..21987723,21987823..21987909,21988189..21988276))
Gene LOC108842795
GeneID 108842795
Organism Raphanus sativus

Protein

Length 976aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018615822.1
Definition PREDICTED: alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
KEGG_TC -
KEGG_Module M00359        [VIEW IN KEGG]
M00360        [VIEW IN KEGG]
KEGG_Reaction R03038        [VIEW IN KEGG]
KEGG_rclass RC00055        [VIEW IN KEGG]
RC00523        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01007        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K01872        [VIEW IN KEGG]
EC 6.1.1.7        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00970        [VIEW IN KEGG]
map00970        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000049        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004812        [VIEW IN EMBL-EBI]
GO:0004813        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006400        [VIEW IN EMBL-EBI]
GO:0006412        [VIEW IN EMBL-EBI]
GO:0006418        [VIEW IN EMBL-EBI]
GO:0006419        [VIEW IN EMBL-EBI]
GO:0006518        [VIEW IN EMBL-EBI]
GO:0006520        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016597        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016875        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031406        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0036094        [VIEW IN EMBL-EBI]
GO:0043038        [VIEW IN EMBL-EBI]
GO:0043039        [VIEW IN EMBL-EBI]
GO:0043043        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043168        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043177        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0043603        [VIEW IN EMBL-EBI]
GO:0043604        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140101        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGTTTCTCGAGAGCAAGCCTCTTCGATTTCCCTCTTCTTAAACCACTCGTGCTTTCTCATCCCTCCTCTGTTTTCTCTTGCAGACGTTTTGTCACCAGAACCGTCCCGGGTCTTTCTCCTGCTGTCTTGTTGCCGACAAGACCAACTCAGATTATTACTAAGAGCTCATCAGTAACAGTACAGCCTGTGTCTGAGGACGCTAGTGAAGACCATCATCATCATCAGTCCAAAGATGTTAGTGGAGATTCAATACGGAGACGTTTTCTTGACTTCTACGCCTCTCGTGGCCATAAGGTGCTTCCAAGCGCCTCTCTTGTACCAGAAGACCCCACCGTCTTGCTAACCATCGCCGGAATGCTTCAGTTCAAGCCTGTTTTCCTTGGGAAGGTACCGAGAGAGGTTCCTTGTGCGACAACCGCACAGAGATGCATACGCACAAACGATTTGGAGAACGTTGGAAGAACGGCCAGGCACCATACCTTCTTCGAGATGCTTGGGAACTTCAGCTTTGGTGATTACTTCAAGAGAGAAGCGATCAGATGGGCGTGGGAGCTGTCCACTGCAGAGTTTGGGCTACCTGCTGACAGAGTTTGGGTCAGCATCTACCAAGACGACGACGAGGCTTTCGAAATCTGGAAGAATGAAGTCGGTGTGCCTGTTGAGCGGATCAAGAGAATGGGTGAGGCTGACAACTTCTGGACCAGTGGACCGACCGGCCCTTGCGGTCCCTGCTCGGAGCTCTACTATGACTTCCATCCTGAGAGAGGGACTGGTGATGATGTTGATCTTGGGGATGATTCAAGGTTCATTGAGTTCTATAATTTGGTGTTCATGCAGTACAACAAGACGGAGGAAGGGTTGCTTGAGCCTCTGAAGCAGAAGAACATAGACACTGGTCTTGGCTTGGAGCGTATAGCTCAGATCCTTCAGAAGGTTCCAAACAACTACGAGACGGATTTGATATATCCAATCATAGCAAAGGTTTTGGAGTTGGCGAACATTTCTTATGACACTGCAGATGAAAAGGCGAAGACGAGTCTAAAAGTGATTGCAGATCACATGAGAGCAGTTGTGTATCTTATATCAGACGGTGTTGTGCCTTCGAATATTGGCAGAGGCTATGTGGTGAGGAGGTTGATAAGAAGAGCTGTTCGCAAGGGGAAGTCTCTGGGGATAGATGGAGATGGGAAAGGTAGTTTGAAGGGAGCCTTTTTACCAACAGTTGCTGAGAAAGTGATAGAGATGAGCACTTATATTGACTCAGATGTGAAACAAAAGTCCCCACGGATCCTTGTGGAGATTAGGCAAGAGGAGCTTCACTTCAAGAAAACTCTGGAAAGAGGGGAGAAGTTACTTGACCAGAAGCTTCAGGATGCACTGTCAACATCTGATAAAACGCCTTGTATATCTGGAAAAGATGCGTTTATTCTCTATGACACATACGGTTTCCCTGTGGAGATAACCGCAGAAGTGGCTGAAGAGCGTGGAGTCAGTATAGACATGGATGGTTTCGAAGTGGAGATGGAGAATCAGAGACGTCAGTCACAAGCCGCTCACAATGTTGTGAAACTAACAGTTGAAGATGGAGATGACATCACGAGAGATATTGATGATACTGAGTTTCTTGGATACGACAGTCTCTCTGCTCGTGCCGTTGTGAAGAGTCTTTTGGTTGGTGGGAAGCCTGTGATAAGGGTTTCTGAAGGCAGTGAGGTGGAGATTCTGCTTGACAGAACTCCGTTCTACGCTGAGTCAGGAGGACAGATTGCAGATCATGGTTTTATGTATGTTAACAGTGATGGGAGCCAAGATGATGCTGTTGTTGAGGTGAGTGATGTGCAGAAGTCTCTTAAGATTTTTGTTCACAAGGGTATAGTAAAGAGTGGAGCTTTGGAAGTTGGTAAGGAGGTGGAAGCAGCTGTAGATGCAGACTTAAGACAACGAGCAAAGGTTCATCATACGGCCACACATTTGCTGCAATCAGCACTTAAGAAAGTAGTAGGACAAGACACATCACAGGCTGGTTCATTAGTAGCATTTGACCGCCTCCGGTTCGACTTCAATTTTAACCGGCCTCTACATGATGGTGAGCTTGAGGAAATCGAATGCCTGATCAATAGGTGGATTGGTGATGCTACGCGTCTTGAAACAAAAGTCCTTCCTCTTGCAGATGCTAAAAAAGCTGGAGCTATTGCAATGTTTGGTGAAAAATATGATGACGAGGTTCGTGTAGTAGAAGTTCCTGGTGTCTCTATGGAACTTTGTGGTGGCACTCACGTTGGAAACACTGCAGAGATAAGAGCCTTCAAGATTATATCGGAACAGGGCATTGCATCTGGAATCAGACGTATTGAAGCAGTTGCAGGTGAAGCATTCATTGAATACATAAACTCACGGGACTCTCAAATGAAACGTCTATGCTCTACTCTCAAGGTGAAAGCAGAGGATGTTACAAACAGAGTTGATAATCTTTTGGAGGAGCTGCGTACTGCTAGAAAAGAAGCATCAGACTTGCGCTCAAAAGCAGCGGTTTACAGAGCATCTGTTATATCAAACAAAGCATTTACTGTAGGAACTTCACAGACAGTAAGAGTGCTGGTTGAGTCGATGGATGACACAGATGCTGACTCTTTAAAGAGTGCAGCCGAGCATTTGGTAAGCACACTTGAAGAACCAGTGGCTGTGGTACTAGGATCATGTCCAGACAAAGACAAGGTTAGTTTAGTGGCTGCATTCAGTCCAGGAGTAGTGTCTCTGGGAGTCCAGGCAGGGAAGTTCATTGGTTCCATAGCTAAGTTGTGCGGAGGAGGAGGTGGTGGAAAGCCTAACTTCGCTCAAGCAGGTGGCAGAAAGCCTGAGAATCTCTCGAGTGCATTGGAGAAAGCTCGGGAAGAACTTGTGGCAACTCTATCCGAAAAGCTTGGGTGA
Protein:  
MSFSRASLFDFPLLKPLVLSHPSSVFSCRRFVTRTVPGLSPAVLLPTRPTQIITKSSSVTVQPVSEDASEDHHHHQSKDVSGDSIRRRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPVFLGKVPREVPCATTAQRCIRTNDLENVGRTARHHTFFEMLGNFSFGDYFKREAIRWAWELSTAEFGLPADRVWVSIYQDDDEAFEIWKNEVGVPVERIKRMGEADNFWTSGPTGPCGPCSELYYDFHPERGTGDDVDLGDDSRFIEFYNLVFMQYNKTEEGLLEPLKQKNIDTGLGLERIAQILQKVPNNYETDLIYPIIAKVLELANISYDTADEKAKTSLKVIADHMRAVVYLISDGVVPSNIGRGYVVRRLIRRAVRKGKSLGIDGDGKGSLKGAFLPTVAEKVIEMSTYIDSDVKQKSPRILVEIRQEELHFKKTLERGEKLLDQKLQDALSTSDKTPCISGKDAFILYDTYGFPVEITAEVAEERGVSIDMDGFEVEMENQRRQSQAAHNVVKLTVEDGDDITRDIDDTEFLGYDSLSARAVVKSLLVGGKPVIRVSEGSEVEILLDRTPFYAESGGQIADHGFMYVNSDGSQDDAVVEVSDVQKSLKIFVHKGIVKSGALEVGKEVEAAVDADLRQRAKVHHTATHLLQSALKKVVGQDTSQAGSLVAFDRLRFDFNFNRPLHDGELEEIECLINRWIGDATRLETKVLPLADAKKAGAIAMFGEKYDDEVRVVEVPGVSMELCGGTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDNLLEELRTARKEASDLRSKAAVYRASVISNKAFTVGTSQTVRVLVESMDDTDADSLKSAAEHLVSTLEEPVAVVLGSCPDKDKVSLVAAFSPGVVSLGVQAGKFIGSIAKLCGGGGGGKPNFAQAGGRKPENLSSALEKAREELVATLSEKLG